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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: AR
wikigenes
PDBj
CellType: VCS2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX099183
GSM801012: VCS2 AR DHT 4h
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
AR
Cell type
Cell type Class
Prostate
Cell type
VCS2
NA
NA
Attributes by original data submitter
Sample
source_name
prostate cancer Cells
treatment
DHT for 4h
passages
14-17
chip antibody
AR
cell line
VCS2
chip antibody manufacturer
Santa Crus
Sequenced DNA Library
library_name
GSM801012: VCS2 AR DHT 4h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17347300
Reads aligned (%)
94.8
Duplicates removed (%)
35.3
Number of peaks
27257 (qval < 1E-05)
hg19
Number of total reads
17347300
Reads aligned (%)
94.3
Duplicates removed (%)
36.1
Number of peaks
27230 (qval < 1E-05)
Base call quality data from
DBCLS SRA